Simulation of observed phylogeny given a dated tree

Simulation of observed phylogeny given a dated tree

simobsphy(tree, mu = 10, sigma = 10, model = "strictgamma")

Arguments

tree

Dated tree

mu

Substitution clock rate

sigma

Per-branch std on the clock rate (used only by relaxed gamma model and negbin model)

model

Which model to use (poisson or negbin or strictgamma or relaxedgamma or arc or carc)

Value

An observed phylogenetic tree