Simulation with imports

simImports(
  localPopStart = 2020,
  importDates = 2020.5,
  samplingStartDate = 2020,
  samplingEndDate = 2021,
  samplingNumber = 1000,
  globalNeg = 1,
  NeFunImp,
  computeKeyStats = T
)

Arguments

localPopStart

Date when the local population was seeded

importDates

Vector of dates when imports occurred

samplingStartDate

Date when sampling starts

samplingEndDate

Date when sampling ends

samplingNumber

Number of genomes sampled

globalNeg

Value of Ne*g for the global population

NeFunImp

Function determining the demographic trajectory of imports

computeKeyStats

Whether or not to compute the key stats, default is TRUE

Value

A simulated dated phylogeny