Inference of Transmission Tree from a Dated Phylogeny

Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks.

References

Didelot et al. (2014) <doi:10.1093/molbev/msu121> Didelot et al. (2017) <doi:10.1093/molbev/msw275>.

See also

https://github.com/xavierdidelot/TransPhylo

Author

Xavier Didelot xavier.didelot@gmail.com